Information for 17-CAGAGAGCTTTGC (Motif 23)

G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C
Reverse Opposite:
T A C G A T G C C G T A C G T A C T G A A C T G A G T C C G A T A T G C A C G T T A G C A C G T A C T G
p-value:1e-9
log p-value:-2.141e+01
Information Content per bp:1.791
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets52.0 +/- 24.8bp
Average Position of motif in Background51.0 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CAGAGAGCTTTGC
----CAGCC----
 G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGAGCTTTGC
TCAGNGAGCGTGAC
 A C G T G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAGAGAGCTTTGC
---CAAGCTT---
 G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CAGAGAGCTTTGC
-AGGVNCCTTTGT
 G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C
A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGAGCTTTGC
CCAGACAG------
 A C G T G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGAGCTTTGC
CCAGACRSVB----
 A C G T G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CAGAGAGCTTTGC
--CTGACCTTTG-
 G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:CAGAGAGCTTTGC-----
---TGGACTTTGNNCTCN
 G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGAGCTTTGC
CTTGAGTGGCT---
 A C G T G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGAGCTTTGC-
SCAGYCADGCATGAC
 A C G T G T A C C G T A A C T G G T C A A T C G C G T A A C T G A G T C A G C T C G A T A C G T A T C G A G T C A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C