Information for 14-GCCAGAGTAC (Motif 21)

A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C
Reverse Opposite:
A C T G G C A T G C T A A G T C A G C T G T A C C A G T C A T G A T C G T A G C
p-value:1e-9
log p-value:-2.211e+01
Information Content per bp:1.671
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.33%
Number of Background Sequences with motif211.0
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets58.6 +/- 19.2bp
Average Position of motif in Background48.0 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGAGTAC
ATGCCAGACN--
 A C G T A C G T A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCAGAGTAC
CGTGCCAAG----
 A C G T A C G T A C G T A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGAGTAC
TGCCAA-----
 A C G T A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCCAGAGTAC-
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCCAGAGTAC-------
TTCNAAGTACTTNNNNN
 A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCAGAGTAC-
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCCAGAGTAC
TTGCCAAG----
 A C G T A C G T A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCCAGAGTAC-----
GGCAAAAGTCCAATAA
 A C G T A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCCAGAGTAC---
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGAGTAC-----
TGCCAAAATAAACANN
 A C G T A T C G T A G C G T A C G T C A C A T G T C G A T C A G C G A T C G T A T G A C A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A