Information for 13-TCTTTATAGG (Motif 20)

C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G
Reverse Opposite:
A G T C G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G C G T A
p-value:1e-9
log p-value:-2.226e+01
Information Content per bp:1.945
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.1 +/- 28.0bp
Average Position of motif in Background46.2 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TCTTTATAGG
TTTTTATTGG
 C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------TCTTTATAGG
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.73
Offset:-6
Orientation:reverse strand
Alignment:------TCTTTATAGG
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TCTTTATAGG
NTTTTATTGG
 C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TCTTTATAGG-
-TTTTATKRGG
 C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TCTTTATAGG---
NNAATTTTATTGGNTN
 A C G T A C G T A C G T C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TCTTTATAGG
NTTTTATTGG
 C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TCTTTATAGG-
-TTTTATTRGN
 C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TCTTTATAGG---
NNANTTTTATTGGNNN
 A C G T A C G T A C G T C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCTTTATAGG-
DGWTTTATGRCN
 A C G T C G A T A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G A C T G A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C