Information for 9-TGCCAATATTTAA (Motif 10)

A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A
Reverse Opposite:
A C G T C G A T C G T A C G T A C G T A A G C T G T C A C G A T A C G T A C T G C T A G A G T C G T C A
p-value:1e-12
log p-value:-2.860e+01
Information Content per bp:1.898
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.0 +/- 30.5bp
Average Position of motif in Background51.9 +/- 10.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAATATTTAA
NNTNNCAATATTAG-
 A C G T A C G T A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAATATTTAA
NNTNNCAATATTAG-
 A C G T A C G T A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATATTTAA
GGTGCCAAGT-----
 A C G T A C G T A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATATTTAA
CGTGCCAAG------
 A C G T A C G T A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGCCAATATTTAA
TGCCAA-------
 A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGCCAATATTTAA
TTGCCAAG------
 A C G T A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATATTTAA
TATGTAAATAT----
 A C G T A C G T A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T A C G T A C G T

HNF1B/MA0153.2/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGCCAATATTTAA-
-GTTAATGATTAAC
 A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A A C G T
A C G T C A T G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C T G A T C G A G A T C

HNF1A/MA0046.2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCCAATATTTAA--
NGTTAATNATTAACN
 A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A A C G T A C G T
C G T A C A T G A G C T G C A T C T G A G T C A G C A T A T G C C G T A C A G T G A C T C G T A T C G A G A T C G A C T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TGCCAATATTTAA--
--TTAATGTTTAACC
 A C G T A C T G A G T C A G T C G T C A C G T A A C G T C T G A A C G T A C G T C G A T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C