Information for 2-AATATTYACCCANATG (Motif 3)

C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
Reverse Opposite:
A G T C C G T A A G C T C G A T C G A T C A T G C T A G A C T G C A G T C T A G C G T A C G T A A G C T C G T A A C G T A C G T
p-value:1e-11
log p-value:-2.666e+01
Information Content per bp:1.714
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.43%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 28.0bp
Average Position of motif in Background55.2 +/- 16.1bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.80
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATATTYACCCANATG
NNTNNCAATATTAG--------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATATTYACCCANATG
NNTNNCAATATTAG--------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AATATTYACCCANATG
AATAATT---------
 C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AATATTYACCCANATG
ATGAATATTC---------
 A C G T A C G T A C G T C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AATATTYACCCANATG
TTAATGTTTAACC-----
 A C G T A C G T C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C A C G T A C G T A C G T A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AATATTYACCCANATG
-ATATTTACATA----
 C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T A C G T A C G T A C G T

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AATATTYACCCANATG
TTAATNATTAAC------
 A C G T A C G T C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
A C G T G A C T T C G A G T C A G C A T T A G C C G T A C A G T A G C T C G T A T G C A G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0022.1_Dlx3/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AATATTYACCCANATG
TCGCGATAATTACCGAC---
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AATATTYACCCANATG
-ATATTTACATA----
 C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A A C G T A C G T A C G T A C G T

PH0023.1_Dlx4/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AATATTYACCCANATG
GCGCTATAATTACCGAC---
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T C T G A C G A T C G A T A G T C G T C A T A G C A G T C G T A C C G T A C G T A C T G A G C A T C T A G
A C G T G T A C T C A G T G A C C A G T C T G A G A C T C G T A C G T A C G A T A C G T C T G A G T A C G T A C T A C G G C T A G T A C A C G T A C G T A C G T