Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 943)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44895)	% of Background Sequences with Motif
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-13	-3.175e+01	0.0000	133.0	14.10%	3133.7	6.98%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-13	-3.076e+01	0.0000	133.0	14.10%	3176.3	7.07%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-12	-2.893e+01	0.0000	88.0	9.33%	1775.9	3.95%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-11	-2.740e+01	0.0000	118.0	12.51%	2811.7	6.26%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-10	-2.317e+01	0.0000	31.0	3.29%	357.6	0.80%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-10	-2.316e+01	0.0000	58.0	6.15%	1055.9	2.35%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-9	-2.278e+01	0.0000	148.0	15.69%	4122.4	9.18%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-9	-2.110e+01	0.0000	142.0	15.06%	4000.3	8.91%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-8	-2.060e+01	0.0000	60.0	6.36%	1192.2	2.65%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-8	-2.036e+01	0.0000	112.0	11.88%	2943.2	6.55%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-8	-2.015e+01	0.0000	112.0	11.88%	2954.2	6.58%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-7	-1.619e+01	0.0000	33.0	3.50%	538.3	1.20%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-6	-1.539e+01	0.0000	95.0	10.07%	2608.2	5.81%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-6	-1.536e+01	0.0000	44.0	4.67%	878.5	1.96%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-6	-1.531e+01	0.0000	62.0	6.57%	1456.0	3.24%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-6	-1.466e+01	0.0000	40.0	4.24%	780.6	1.74%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-5	-1.281e+01	0.0001	79.0	8.38%	2179.4	4.85%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-5	-1.260e+01	0.0001	119.0	12.62%	3711.0	8.26%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-5	-1.220e+01	0.0001	28.0	2.97%	502.4	1.12%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-5	-1.217e+01	0.0001	47.0	4.98%	1093.9	2.44%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-4	-1.056e+01	0.0004	16.0	1.70%	220.3	0.49%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-4	-9.494e+00	0.0012	22.0	2.33%	406.2	0.90%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-3	-8.650e+00	0.0028	97.0	10.29%	3179.5	7.08%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-8.292e+00	0.0038	65.0	6.89%	1957.4	4.36%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-3	-7.843e+00	0.0057	153.0	16.22%	5584.4	12.43%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-3	-7.218e+00	0.0103	9.0	0.95%	112.7	0.25%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-7.121e+00	0.0109	39.0	4.14%	1068.4	2.38%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.801e+00	0.0393	10.0	1.06%	165.9	0.37%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-5.732e+00	0.0407	47.0	4.98%	1463.7	3.26%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-2	-5.669e+00	0.0419	137.0	14.53%	5200.5	11.58%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-5.630e+00	0.0421	36.0	3.82%	1052.5	2.34%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-5.549e+00	0.0443	61.0	6.47%	2031.6	4.52%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-5.500e+00	0.0451	16.0	1.70%	354.4	0.79%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-5.484e+00	0.0451	17.0	1.80%	387.1	0.86%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-4.901e+00	0.0774	12.0	1.27%	249.8	0.56%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-4.790e+00	0.0840	69.0	7.32%	2437.9	5.43%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-4.753e+00	0.0849	7.0	0.74%	108.5	0.24%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-2	-4.721e+00	0.0853	22.0	2.33%	595.4	1.33%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-4.706e+00	0.0853	7.0	0.74%	109.3	0.24%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-4.639e+00	0.0880	28.0	2.97%	820.0	1.83%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-4.501e+00	0.0985	61.0	6.47%	2140.9	4.77%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-4.425e+00	0.1038	27.0	2.86%	797.1	1.77%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-4.299e+00	0.1150	10.0	1.06%	207.6	0.46%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.977e+00	0.1550	33.0	3.50%	1062.6	2.37%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.930e+00	0.1589	28.0	2.97%	871.5	1.94%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-3.870e+00	0.1650	208.0	22.06%	8691.1	19.35%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.676e+00	0.1960	95.0	10.07%	3697.5	8.23%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.615e+00	0.2042	15.0	1.59%	405.0	0.90%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.581e+00	0.2069	16.0	1.70%	443.1	0.99%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-3.459e+00	0.2291	6.0	0.64%	111.3	0.25%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-3.353e+00	0.2498	18.0	1.91%	531.9	1.18%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-3.218e+00	0.2802	18.0	1.91%	540.2	1.20%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-3.139e+00	0.2975	21.0	2.23%	661.3	1.47%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.134e+00	0.2975	9.0	0.95%	218.9	0.49%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.018e+00	0.3237	8.0	0.85%	189.4	0.42%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.949e+00	0.3405	151.0	16.01%	6333.9	14.10%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.906e+00	0.3491	7.0	0.74%	160.3	0.36%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-2.885e+00	0.3506	14.0	1.48%	411.6	0.92%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.866e+00	0.3513	15.0	1.59%	450.2	1.00%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.793e+00	0.3717	23.0	2.44%	769.3	1.71%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.754e+00	0.3799	59.0	6.26%	2287.5	5.09%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1	-2.720e+00	0.3868	15.0	1.59%	460.2	1.02%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.690e+00	0.3922	63.0	6.68%	2471.4	5.50%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.519e+00	0.4582	1.0	0.11%	4.6	0.01%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.440e+00	0.4879	11.0	1.17%	326.3	0.73%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.423e+00	0.4889	40.0	4.24%	1519.9	3.38%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.409e+00	0.4889	15.0	1.59%	483.9	1.08%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-2.374e+00	0.4986	19.0	2.01%	646.9	1.44%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.343e+00	0.5064	88.0	9.33%	3642.8	8.11%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.321e+00	0.5106	17.0	1.80%	570.7	1.27%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.282e+00	0.5231	13.0	1.38%	414.3	0.92%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.282e+00	0.5231	3.0	0.32%	54.0	0.12%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.219e+00	0.5420	87.0	9.23%	3626.0	8.07%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.164e+00	0.5651	18.0	1.91%	625.2	1.39%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.156e+00	0.5651	7.0	0.74%	193.5	0.43%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.140e+00	0.5651	8.0	0.85%	231.3	0.52%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.104e+00	0.5766	63.0	6.68%	2578.5	5.74%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.055e+00	0.5980	10.0	1.06%	313.9	0.70%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.974e+00	0.6400	2.0	0.21%	31.6	0.07%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.957e+00	0.6425	13.0	1.38%	440.6	0.98%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.956e+00	0.6425	8.0	0.85%	242.8	0.54%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.894e+00	0.6679	9.0	0.95%	285.8	0.64%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.866e+00	0.6786	55.0	5.83%	2270.8	5.06%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.856e+00	0.6786	14.0	1.48%	490.8	1.09%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.845e+00	0.6786	16.0	1.70%	574.9	1.28%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.834e+00	0.6786	12.0	1.27%	410.7	0.91%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.829e+00	0.6786	2.0	0.21%	34.1	0.08%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.826e+00	0.6786	4.0	0.42%	100.6	0.22%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.818e+00	0.6786	7.0	0.74%	212.0	0.47%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.796e+00	0.6786	6.0	0.64%	176.0	0.39%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.788e+00	0.6786	17.0	1.80%	622.0	1.39%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.733e+00	0.6991	17.0	1.80%	628.2	1.40%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.729e+00	0.6991	9.0	0.95%	297.6	0.66%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.683e+00	0.7196	14.0	1.48%	507.3	1.13%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.679e+00	0.7196	94.0	9.97%	4080.8	9.09%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.664e+00	0.7196	1.0	0.11%	10.4	0.02%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.652e+00	0.7196	112.0	11.88%	4914.4	10.94%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.605e+00	0.7465	13.0	1.38%	473.1	1.05%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.603e+00	0.7465	10.0	1.06%	348.8	0.78%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.597e+00	0.7465	4.0	0.42%	110.1	0.25%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.582e+00	0.7465	2.0	0.21%	40.9	0.09%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.546e+00	0.7607	22.0	2.33%	867.0	1.93%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.545e+00	0.7607	2.0	0.21%	41.6	0.09%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.457e+00	0.8150	21.0	2.23%	836.7	1.86%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.452e+00	0.8150	156.0	16.54%	7023.2	15.64%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.450e+00	0.8150	43.0	4.56%	1819.2	4.05%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.429e+00	0.8150	51.0	5.41%	2186.3	4.87%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.419e+00	0.8156	4.0	0.42%	119.8	0.27%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.406e+00	0.8186	23.0	2.44%	932.4	2.08%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.347e+00	0.8603	11.0	1.17%	415.9	0.93%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.342e+00	0.8603	174.0	18.45%	7910.1	17.61%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.303e+00	0.8828	5.0	0.53%	166.5	0.37%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.299e+00	0.8828	25.0	2.65%	1039.3	2.31%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.297e+00	0.8828	16.0	1.70%	639.6	1.42%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.280e+00	0.8828	7.0	0.74%	251.2	0.56%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.266e+00	0.8850	18.0	1.91%	732.5	1.63%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.260e+00	0.8850	14.0	1.48%	556.8	1.24%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.260e+00	0.8850	14.0	1.48%	556.7	1.24%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.259e+00	0.8850	56.0	5.94%	2458.5	5.47%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.247e+00	0.8850	104.0	11.03%	4683.3	10.43%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.191e+00	0.9146	7.0	0.74%	259.5	0.58%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.176e+00	0.9208	13.0	1.38%	523.7	1.17%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.170e+00	0.9208	3.0	0.32%	93.1	0.21%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.156e+00	0.9240	1.0	0.11%	18.8	0.04%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.149e+00	0.9240	31.0	3.29%	1340.7	2.99%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.140e+00	0.9242	5.0	0.53%	178.9	0.40%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.090e+00	0.9639	33.0	3.50%	1445.9	3.22%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.088e+00	0.9639	78.0	8.27%	3531.4	7.86%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.086e+00	0.9639	64.0	6.79%	2880.4	6.41%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.082e+00	0.9639	3.0	0.32%	99.0	0.22%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.069e+00	0.9639	12.0	1.27%	494.0	1.10%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.063e+00	0.9639	50.0	5.30%	2237.3	4.98%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.049e+00	0.9639	21.0	2.23%	904.4	2.01%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.049e+00	0.9639	3.0	0.32%	100.9	0.22%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.026e+00	0.9664	11.0	1.17%	454.1	1.01%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.021e+00	0.9664	13.0	1.38%	545.8	1.22%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.004e+00	0.9737	10.0	1.06%	412.8	0.92%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-9.884e-01	0.9817	4.0	0.42%	147.9	0.33%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-9.599e-01	1.0000	33.0	3.50%	1477.9	3.29%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-9.590e-01	1.0000	12.0	1.27%	510.0	1.14%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-9.409e-01	1.0000	31.0	3.29%	1389.1	3.09%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.399e-01	1.0000	8.0	0.85%	330.5	0.74%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-9.131e-01	1.0000	7.0	0.74%	288.6	0.64%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.112e-01	1.0000	6.0	0.64%	243.4	0.54%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-8.948e-01	1.0000	38.0	4.03%	1728.8	3.85%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.798e-01	1.0000	31.0	3.29%	1405.4	3.13%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-8.701e-01	1.0000	8.0	0.85%	339.3	0.76%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-8.618e-01	1.0000	5.0	0.53%	203.2	0.45%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.473e-01	1.0000	18.0	1.91%	806.6	1.80%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-8.374e-01	1.0000	1.0	0.11%	27.8	0.06%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-8.225e-01	1.0000	39.0	4.14%	1797.6	4.00%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.072e-01	1.0000	6.0	0.64%	255.3	0.57%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.873e-01	1.0000	119.0	12.62%	5595.1	12.46%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-7.791e-01	1.0000	12.0	1.27%	539.0	1.20%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-7.517e-01	1.0000	6.0	0.64%	262.1	0.58%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.490e-01	1.0000	23.0	2.44%	1064.6	2.37%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.284e-01	1.0000	3.0	0.32%	124.5	0.28%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-7.029e-01	1.0000	24.0	2.55%	1124.7	2.50%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.931e-01	1.0000	1.0	0.11%	33.3	0.07%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.828e-01	1.0000	4.0	0.42%	176.2	0.39%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.789e-01	1.0000	2.0	0.21%	81.5	0.18%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.728e-01	1.0000	15.0	1.59%	703.5	1.57%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-6.668e-01	1.0000	17.0	1.80%	800.8	1.78%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.668e-01	1.0000	91.0	9.65%	4331.5	9.64%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.664e-01	1.0000	104.0	11.03%	4951.2	11.02%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.579e-01	1.0000	5.0	0.53%	227.1	0.51%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.537e-01	1.0000	2.0	0.21%	83.6	0.19%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.448e-01	1.0000	6.0	0.64%	277.6	0.62%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.415e-01	1.0000	2.0	0.21%	84.5	0.19%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.338e-01	1.0000	1.0	0.11%	36.4	0.08%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-6.316e-01	1.0000	6.0	0.64%	279.7	0.62%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.295e-01	1.0000	2.0	0.21%	85.1	0.19%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.061e-01	1.0000	6.0	0.64%	283.1	0.63%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-6.061e-01	1.0000	6.0	0.64%	283.8	0.63%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-5.867e-01	1.0000	11.0	1.17%	530.8	1.18%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.865e-01	1.0000	49.0	5.20%	2364.0	5.26%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.822e-01	1.0000	3.0	0.32%	139.7	0.31%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.769e-01	1.0000	199.0	21.10%	9551.6	21.27%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.734e-01	1.0000	41.0	4.35%	1985.0	4.42%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.548e-01	1.0000	113.0	11.98%	5453.6	12.14%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-5.521e-01	1.0000	6.0	0.64%	292.1	0.65%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-5.486e-01	1.0000	5.0	0.53%	243.9	0.54%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-5.464e-01	1.0000	6.0	0.64%	293.7	0.65%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-5.423e-01	1.0000	5.0	0.53%	244.8	0.54%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.420e-01	1.0000	16.0	1.70%	786.0	1.75%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.348e-01	1.0000	21.0	2.23%	1031.7	2.30%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-5.342e-01	1.0000	1.0	0.11%	42.9	0.10%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-5.330e-01	1.0000	44.0	4.67%	2147.7	4.78%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-5.238e-01	1.0000	12.0	1.27%	594.4	1.32%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.214e-01	1.0000	17.0	1.80%	840.3	1.87%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.202e-01	1.0000	62.0	6.57%	3023.2	6.73%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-5.199e-01	1.0000	12.0	1.27%	595.5	1.33%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-5.168e-01	1.0000	38.0	4.03%	1865.0	4.15%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.060e-01	1.0000	44.0	4.67%	2160.7	4.81%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.026e-01	1.0000	4.0	0.42%	200.4	0.45%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-4.970e-01	1.0000	45.0	4.77%	2213.3	4.93%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.925e-01	1.0000	10.0	1.06%	503.4	1.12%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-4.921e-01	1.0000	33.0	3.50%	1632.8	3.64%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.829e-01	1.0000	50.0	5.30%	2463.2	5.48%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-4.806e-01	1.0000	25.0	2.65%	1246.7	2.78%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.761e-01	1.0000	11.0	1.17%	557.8	1.24%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.761e-01	1.0000	11.0	1.17%	557.7	1.24%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-4.713e-01	1.0000	4.0	0.42%	205.8	0.46%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.695e-01	1.0000	14.0	1.48%	708.1	1.58%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-4.564e-01	1.0000	7.0	0.74%	361.1	0.80%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-4.524e-01	1.0000	33.0	3.50%	1650.0	3.67%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.524e-01	1.0000	3.0	0.32%	156.6	0.35%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.469e-01	1.0000	59.0	6.26%	2921.1	6.50%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.340e-01	1.0000	16.0	1.70%	819.2	1.82%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-4.303e-01	1.0000	7.0	0.74%	367.8	0.82%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.291e-01	1.0000	6.0	0.64%	316.3	0.70%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.177e-01	1.0000	27.0	2.86%	1371.9	3.05%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-4.162e-01	1.0000	5.0	0.53%	267.5	0.60%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-4.051e-01	1.0000	21.0	2.23%	1079.3	2.40%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.984e-01	1.0000	18.0	1.91%	932.4	2.08%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.882e-01	1.0000	5.0	0.53%	273.0	0.61%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.764e-01	1.0000	73.0	7.74%	3652.0	8.13%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-3.725e-01	1.0000	32.0	3.39%	1641.7	3.66%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.687e-01	1.0000	1.0	0.11%	56.2	0.13%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-3.682e-01	1.0000	37.0	3.92%	1891.8	4.21%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-3.645e-01	1.0000	30.0	3.18%	1546.6	3.44%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.594e-01	1.0000	4.0	0.42%	226.1	0.50%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.577e-01	1.0000	5.0	0.53%	280.7	0.63%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.352e-01	1.0000	15.0	1.59%	806.0	1.79%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.333e-01	1.0000	45.0	4.77%	2309.5	5.14%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.318e-01	1.0000	23.0	2.44%	1213.7	2.70%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-3.251e-01	1.0000	1.0	0.11%	61.7	0.14%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.239e-01	1.0000	4.0	0.42%	234.3	0.52%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.220e-01	1.0000	7.0	0.74%	396.5	0.88%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.176e-01	1.0000	6.0	0.64%	344.0	0.77%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.171e-01	1.0000	16.0	1.70%	865.7	1.93%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.102e-01	1.0000	12.0	1.27%	662.4	1.47%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.094e-01	1.0000	1.0	0.11%	63.4	0.14%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.077e-01	1.0000	3.0	0.32%	182.4	0.41%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-3.027e-01	1.0000	11.0	1.17%	613.2	1.37%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.869e-01	1.0000	9.0	0.95%	515.0	1.15%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.859e-01	1.0000	23.0	2.44%	1238.6	2.76%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.847e-01	1.0000	6.0	0.64%	354.3	0.79%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.832e-01	1.0000	16.0	1.70%	881.1	1.96%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.782e-01	1.0000	2.0	0.21%	130.1	0.29%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.756e-01	1.0000	22.0	2.33%	1193.1	2.66%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.732e-01	1.0000	4.0	0.42%	247.1	0.55%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.718e-01	1.0000	52.0	5.51%	2704.9	6.02%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.651e-01	1.0000	3.0	0.32%	192.8	0.43%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.651e-01	1.0000	3.0	0.32%	192.3	0.43%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.608e-01	1.0000	13.0	1.38%	736.1	1.64%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.560e-01	1.0000	15.0	1.59%	843.1	1.88%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.551e-01	1.0000	51.0	5.41%	2669.0	5.94%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.481e-01	1.0000	80.0	8.48%	4115.5	9.16%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.372e-01	1.0000	2.0	0.21%	139.3	0.31%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.340e-01	1.0000	7.0	0.74%	428.0	0.95%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.216e-01	1.0000	3.0	0.32%	204.4	0.46%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-2.214e-01	1.0000	139.0	14.74%	7048.8	15.69%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.195e-01	1.0000	5.0	0.53%	321.4	0.72%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.164e-01	1.0000	12.0	1.27%	707.0	1.57%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.119e-01	1.0000	3.0	0.32%	207.0	0.46%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.093e-01	1.0000	12.0	1.27%	710.0	1.58%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.065e-01	1.0000	5.0	0.53%	326.2	0.73%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.040e-01	1.0000	12.0	1.27%	713.7	1.59%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.926e-01	1.0000	6.0	0.64%	389.6	0.87%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.884e-01	1.0000	34.0	3.61%	1873.1	4.17%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.883e-01	1.0000	64.0	6.79%	3391.9	7.55%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.876e-01	1.0000	65.0	6.89%	3442.8	7.67%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.809e-01	1.0000	4.0	0.42%	278.7	0.62%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.751e-01	1.0000	1.0	0.11%	87.8	0.20%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.585e-01	1.0000	6.0	0.64%	406.3	0.90%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.579e-01	1.0000	22.0	2.33%	1279.4	2.85%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.571e-01	1.0000	58.0	6.15%	3131.5	6.97%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.548e-01	1.0000	22.0	2.33%	1282.9	2.86%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.527e-01	1.0000	1.0	0.11%	93.1	0.21%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.499e-01	1.0000	2.0	0.21%	165.5	0.37%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.379e-01	1.0000	73.0	7.74%	3918.6	8.73%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.360e-01	1.0000	24.0	2.55%	1407.6	3.13%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.359e-01	1.0000	14.0	1.48%	870.7	1.94%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.352e-01	1.0000	10.0	1.06%	649.0	1.45%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.337e-01	1.0000	21.0	2.23%	1250.7	2.78%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.289e-01	1.0000	5.0	0.53%	364.9	0.81%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.192e-01	1.0000	2.0	0.21%	178.4	0.40%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.140e-01	1.0000	1.0	0.11%	106.6	0.24%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.138e-01	1.0000	3.0	0.32%	249.0	0.55%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.083e-01	1.0000	34.0	3.61%	1970.7	4.39%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-9.892e-02	1.0000	15.0	1.59%	963.9	2.15%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.768e-02	1.0000	18.0	1.91%	1130.4	2.52%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-9.755e-02	1.0000	71.0	7.53%	3897.0	8.68%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-8.861e-02	1.0000	9.0	0.95%	634.3	1.41%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-8.450e-02	1.0000	6.0	0.64%	459.5	1.02%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.232e-02	1.0000	3.0	0.32%	269.7	0.60%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-7.829e-02	1.0000	1.0	0.11%	123.6	0.28%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-7.829e-02	1.0000	1.0	0.11%	123.9	0.28%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.792e-02	1.0000	2.0	0.21%	202.7	0.45%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-7.722e-02	1.0000	26.0	2.76%	1597.6	3.56%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.286e-02	1.0000	8.0	0.85%	593.0	1.32%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.121e-02	1.0000	54.0	5.73%	3089.1	6.88%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.518e-02	1.0000	61.0	6.47%	3469.5	7.73%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.485e-02	1.0000	34.0	3.61%	2053.3	4.57%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.864e-02	1.0000	29.0	3.08%	1799.3	4.01%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.817e-02	1.0000	16.0	1.70%	1081.8	2.41%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-5.714e-02	1.0000	32.0	3.39%	1965.1	4.38%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.527e-02	1.0000	1.0	0.11%	139.9	0.31%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.343e-02	1.0000	6.0	0.64%	496.9	1.11%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.306e-02	1.0000	4.0	0.42%	366.1	0.82%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-5.142e-02	1.0000	3.0	0.32%	299.7	0.67%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-4.860e-02	1.0000	57.0	6.04%	3317.4	7.39%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.690e-02	1.0000	43.0	4.56%	2585.9	5.76%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-4.563e-02	1.0000	52.0	5.51%	3066.6	6.83%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.476e-02	1.0000	32.0	3.39%	2001.0	4.46%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.739e-02	1.0000	3.0	0.32%	319.7	0.71%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.642e-02	1.0000	6.0	0.64%	526.5	1.17%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.429e-02	1.0000	39.0	4.14%	2420.5	5.39%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.315e-02	1.0000	128.0	13.57%	7039.3	15.67%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.917e-02	1.0000	5.0	0.53%	476.4	1.06%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.435e-02	1.0000	9.0	0.95%	751.4	1.67%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.358e-02	1.0000	4.0	0.42%	421.6	0.94%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.299e-02	1.0000	5.0	0.53%	493.9	1.10%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.269e-02	1.0000	11.0	1.17%	883.0	1.97%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.173e-02	1.0000	78.0	8.27%	4565.6	10.17%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.156e-02	1.0000	23.0	2.44%	1596.6	3.56%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.151e-02	1.0000	51.0	5.41%	3139.8	6.99%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.989e-02	1.0000	8.0	0.85%	704.0	1.57%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.702e-02	1.0000	11.0	1.17%	908.8	2.02%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.499e-02	1.0000	5.0	0.53%	523.5	1.17%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.342e-02	1.0000	26.0	2.76%	1824.6	4.06%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.334e-02	1.0000	10.0	1.06%	866.2	1.93%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.063e-02	1.0000	114.0	12.09%	6572.5	14.63%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-9.262e-03	1.0000	5.0	0.53%	556.7	1.24%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-8.098e-03	1.0000	15.0	1.59%	1225.9	2.73%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.921e-03	1.0000	28.0	2.97%	2113.3	4.71%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.143e-03	1.0000	72.0	7.64%	4628.7	10.31%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.110e-03	1.0000	92.0	9.76%	5707.9	12.71%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.710e-03	1.0000	59.0	6.26%	3946.1	8.79%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.280e-03	1.0000	51.0	5.41%	3536.3	7.87%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.890e-04	1.0000	2.0	0.21%	487.9	1.09%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.760e-04	1.0000	15.0	1.59%	1490.7	3.32%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.310e-04	1.0000	41.0	4.35%	3216.1	7.16%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	0.000e+00	1.0000	0.0	0.00%	31.0	0.07%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	16.0	0.04%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	31.1	0.07%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	45.0	0.10%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	28.4	0.06%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	28.1	0.06%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	29.9	0.07%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	0.000e+00	1.0000	0.0	0.00%	30.8	0.07%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	72.4	0.16%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	71.0	0.16%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	40.0	0.09%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	0.000e+00	1.0000	0.0	0.00%	122.9	0.27%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	11.2	0.03%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	0.000e+00	1.0000	0.0	0.00%	91.9	0.20%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	8.7	0.02%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	66.3	0.15%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	25.3	0.06%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	66.3	0.15%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	0.000e+00	1.0000	0.0	0.00%	92.4	0.21%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	12.8	0.03%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	13.8	0.03%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	49.4	0.11%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	36.8	0.08%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	82.9	0.18%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	7.7	0.02%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	0.000e+00	1.0000	0.0	0.00%	58.1	0.13%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	13.7	0.03%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	15.5	0.03%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	4.4	0.01%