Information for 6-CGGCTCGCTT (Motif 6)

T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T
Reverse Opposite:
G C T A C G T A T C A G G T A C T A C G C T G A A T C G T G A C G T A C A T C G
p-value:1e-12
log p-value:-2.838e+01
Information Content per bp:1.652
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif7.95%
Number of Background Sequences with motif1400.4
Percentage of Background Sequences with motif3.12%
Average Position of motif in Targets49.1 +/- 25.9bp
Average Position of motif in Background49.3 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGGCTCGCTT
-GGCGCGCT-
 T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGGCTCGCTT
-NGCTN----
 T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGGCTCGCTT-------
CGTCACGCATGACTGCA
 T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CGGCTCGCTT-------
CGTCACGCATGACTGCA
 T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CGGCTCGCTT-
ATAAGGGCGCGCGAT
 A C G T A C G T A C G T A C G T T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CGGCTCGCTT----
NTCGCGCGCCTTNNN
 A C G T T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T A C G T A C G T A C G T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CGGCTCGCTT
--GCTCCG--
 T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T
A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CGGCTCGCTT
GGTCTGGCAT
 T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Hes1/MA1099.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CGGCTCGCTT-
-GGCACGCGTC
 T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T A C G T
A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CGGCTCGCTT
---CACGCA-
 T A G C C A T G A C T G T A G C G A C T A T G C C A T G A G T C G C A T C G A T
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T