Information for 5-GGAGCCATGTCGVCCA (Motif 20)

A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
Reverse Opposite:
A C G T A T C G A C T G A C T G A T G C A C T G C G T A T A G C G T C A A C G T A C T G A C T G A G T C A C G T A T G C G T A C
p-value:1e-10
log p-value:-2.413e+01
Information Content per bp:1.811
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.8 +/- 13.7bp
Average Position of motif in Background21.6 +/- 1.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGAGCCATGTCGVCCA
GCNGCCATCTTG----
 A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGAGCCATGTCGVCCA
GCCGCCATCTTG----
 A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGAGCCATGTCGVCCA
CGTGCCAAG-------
 A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGAGCCATGTCGVCCA
GTCCGCCATTA------
 A C G T A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGAGCCATGTCGVCCA
GTTGCCATGGCAACCG
 A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GGAGCCATGTCGVCCA
GTTGCCATGGCAACM-
 A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGAGCCATGTCGVCCA
--TGCCAA--------
 A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GGAGCCATGTCGVCCA
-ATGCCACGTCATCA-
 A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
A C G T T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A A C G T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GGAGCCATGTCGVCCA
---GCCACRCCCACY-
 A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
A C G T A C G T A C G T T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----GGAGCCATGTCGVCCA
AGCTCGGCGCCAAAAGC----
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G G T C A A C T G A G T C A G T C C G T A A C G T A T C G G C A T A G T C A T C G T A G C A G T C A T G C C G T A
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C A C G T A C G T A C G T A C G T