Information for 1-TATATAVGCG (Motif 1)

A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G
Reverse Opposite:
T A G C A T C G A T G C A G T C A G C T C T G A C G A T C G T A C G A T G T C A
p-value:1e-21
log p-value:-5.028e+01
Information Content per bp:1.610
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.30%
Number of Background Sequences with motif409.1
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets54.1 +/- 24.4bp
Average Position of motif in Background48.6 +/- 37.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-TATATAVGCG----
GTATAAAAGGCGGGG
 A C G T A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-TATATAVGCG----
GTATAAAAGGCGGGG
 A C G T A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0163.1_Six6_2/Jaspar

Match Rank:3
Score:0.72
Offset:-7
Orientation:reverse strand
Alignment:-------TATATAVGCG
ANNNGGATATATCCNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------TATATAVGCG
NANTTATATATAANGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TATATAVGCG
GNCTATAAAAGG-
 A C G T A C G T A C G T A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TATATAVGCG
DGWTTTATGRCN-
 A C G T A C G T A C G T A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TATATAVGCG
TTTTATKRGG-
 A C G T A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

FOXL1/MA0033.2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TATATAVGCG
GTAAACA----
 A C G T A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G
C T A G G A C T T G C A G T C A T G C A A G T C G T C A A C G T A C G T A C G T A C G T

SRF/MA0083.3/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------TATATAVGCG
TGNCCATATATGGTCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TATATAVGCG
ATGTAAACADGS-
 A C G T A C G T A C G T A C G T C G T A C G A T C G T A G A C T T C G A T C A G T A C G T A G C A T C G
C G T A C A G T T C A G C G A T G T C A G T C A C G T A A G T C C G T A C G A T A T C G A T G C A C G T