Information for 5-CTTGATSKAAWTS (Motif 5)

A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C
Reverse Opposite:
A T C G C T G A C G A T A C G T A G C T G T C A A T C G C G T A A C G T A G T C C G T A C G T A A C T G
p-value:1e-13
log p-value:-3.120e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.3 +/- 25.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTTGATSKAAWTS
-ATGATGCAAT--
 A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C
A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTTGATSKAAWTS
-MTGATGCAAT--
 A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C
A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------CTTGATSKAAWTS
NNTTCCTTTGATCTANA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTTGATSKAAWTS
--TGACCTARTT-
 A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CTTGATSKAAWTS
NNNNNATTGATGNGTGN-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTTGATSKAAWTS--
-TTGACCTANTTATN
 A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTTGATSKAAWTS
ATTTCCTTTGATCTATA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTTGATSKAAWTS
AATCCCTTTGATCTATC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:9
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------CTTGATSKAAWTS
NNTTCCTTTGATCTNNA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C
C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTTGATSKAAWTS
NANTTCATTGAATTA
 A C G T A C G T A G T C A C G T A C G T A C T G C G T A A C G T A T G C A C G T C T G A G T C A C G T A A G C T A T G C
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A