Information for 9-CARGACTWWAGCA (Motif 9)

A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A
Reverse Opposite:
A C G T A C T G G T A C C G A T C G A T C G T A C G T A A C T G A C G T A G T C G A C T A C G T A C T G
p-value:1e-11
log p-value:-2.611e+01
Information Content per bp:1.885
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.9 +/- 27.7bp
Average Position of motif in Background56.8 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CARGACTWWAGCA-
TCATGAATWATTCAT
 A C G T A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CARGACTWWAGCA-
WYATGCATWATGCAT
 A C G T A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CARGACTWWAGCA
NNATTGGACTTTNGNN
 A C G T A C G T A C G T A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CARGACTWWAGCA-
CATAACCACTTAACAAC
 A C G T A C G T A C G T A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:5
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CARGACTWWAGCA
CATGAC-------
 A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A
T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CARGACTWWAGCA
-RSCACTYRAG--
 A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CARGACTWWAGCA
AAGCACTTAA---
 A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CARGACTWWAGCA---
ATTTACAGTAGCAAAA
 A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

DUXA/MA0884.1/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CARGACTWWAGCA-
-CTAATTTAATCAA
 A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A A C G T
A C G T G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CARGACTWWAGCA
NCGTGACN------
 A C G T A G T C C G T A C T A G A C T G C G T A A G T C A C G T C G A T G C T A C G T A A C T G G T A C C G T A
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T