Information for 3-CNGTCTGGCTBCB (Motif 3)

G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T
Reverse Opposite:
T C G A T C A G T G C A T G C A C T A G G A T C A G T C C G T A C T A G C T G A A T G C C G T A C A T G
p-value:1e-17
log p-value:-4.061e+01
Information Content per bp:1.610
Number of Target Sequences with motif145.0
Percentage of Target Sequences with motif16.53%
Number of Background Sequences with motif3651.6
Percentage of Background Sequences with motif7.64%
Average Position of motif in Targets52.8 +/- 26.3bp
Average Position of motif in Background50.2 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CNGTCTGGCTBCB
-GGTCTGGCAT--
 G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CNGTCTGGCTBCB
CTGTCTGG-----
 G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CNGTCTGGCTBCB
CTGTCTGTCACCT
 G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CNGTCTGGCTBCB
VBSYGTCTGG-----
 A C G T A C G T G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CNGTCTGGCTBCB
-TGTCTGDCACCT
 G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CNGTCTGGCTBCB
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CNGTCTGGCTBCB
TWGTCTGV-----
 G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CNGTCTGGCTBCB----
--GYCTGGYYTNTGTCA
 G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CNGTCTGGCTBCB
---NTTGGCANN-
 G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CNGTCTGGCTBCB
---GCTGTG----
 G A T C G C A T T A C G A G C T A G T C C G A T A C T G C T A G A G T C A C G T A C G T A G T C A G C T
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T