Information for 15-CTCGCAGCTT (Motif 27)

A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T
Reverse Opposite:
C G T A G T C A T A C G A G T C C G A T A C T G T G A C C A T G C G T A A C T G
p-value:1e-5
log p-value:-1.354e+01
Information Content per bp:1.813
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif385.0
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets44.4 +/- 22.5bp
Average Position of motif in Background50.5 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTCGCAGCTT
TTMACACCTT
 A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T
C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTCGCAGCTT
--ANCAGCTG
 A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T
A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

NHLH1/MA0048.2/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTCGCAGCTT--
--CGCAGCTGCG
 A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTCGCAGCTT
--CACAGN--
 A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTCGCAGCTT---
---GCAGCTGTNN
 A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CTCGCAGCTT-
----AAGCTTG
 A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

Ascl2/MA0816.1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTCGCAGCTT--
--AGCAGCTGCT
 A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTCGCAGCTT-
-CAGCAGCTGN
 A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T
A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTCGCAGCTT-----
NNNNAGCAGCTGCTGAN
 A C G T A C G T A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTCGCAGCTT----
--AGCAGCTGCTNN
 A G T C C G A T G T A C A C T G A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C