Information for 8-GTGAGTGKCGCKC (Motif 12)

A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
Reverse Opposite:
A C T G G T A C A C T G G T A C A C T G G T C A G T A C C G T A A G T C A C G T A G T C C G T A A G T C
p-value:1e-10
log p-value:-2.363e+01
Information Content per bp:1.917
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 22.3bp
Average Position of motif in Background74.4 +/- 6.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTGAGTGKCGCKC
CTTGAGTGGCT---
 A C G T A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTGAGTGKCGCKC
BTGABTGACAGS-
 A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTGAGTGKCGCKC
TTRAGTGSYK---
 A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTGAGTGKCGCKC
RGTTAGTGCCCY--
 A C G T A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T A C G T A C G T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTGAGTGKCGCKC
RGTGGGYGTGGC--
 A C G T A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
C T G A T C A G C A G T C T A G A T C G A C T G G A T C C A T G A C G T C A T G A C T G A G T C A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTGAGTGKCGCKC
-TGGGTGTGGC--
 A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTGAGTGKCGCKC
NNGCGTGTGTGCNGCN-
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTGAGTGKCGCKC
TTGAGTGSTT---
 A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTGAGTGKCGCKC
-TGAGTGACAGSC
 A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTGAGTGKCGCKC
NTGATTGACAGN-
 A C T G A C G T A C T G C G T A A C T G A C G T A C T G A C G T G T A C A C T G A G T C A C T G A G T C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T