Information for 6-ACAATGGMAACTG (Motif 9)

T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
Reverse Opposite:
A G T C C T G A A T C G A C G T G C A T A C G T A G T C A G T C G T C A A G C T A C G T A C T G A G C T
p-value:1e-11
log p-value:-2.647e+01
Information Content per bp:1.667
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.73%
Number of Background Sequences with motif198.4
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets55.5 +/- 26.3bp
Average Position of motif in Background50.3 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----ACAATGGMAACTG
NNTNNACAATGGGANNN-
 A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ACAATGGMAACTG
--AATGGAAAAT-
 T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ACAATGGMAACTG
ACAAAGGNBCCT-
 T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGMAACTG
VRAACAATGG------
 A C G T A C G T A C G T T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGMAACTG
AACAAAGG------
 A C G T T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGMAACTG
VRRACAAWGG------
 A C G T A C G T A C G T T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ACAATGGMAACTG
GAACAATGGN-----
 A C G T A C G T T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGMAACTG
RACAAWGG------
 A C G T T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0033.1_Irf3_1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ACAATGGMAACTG
GAGAACCGAAACTG
 A C G T T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGMAACTG
AAAACAATGG------
 A C G T A C G T A C G T T C G A T A G C G T C A C T G A C A G T A C T G C T A G T G C A C G T A G T C A T A G C A G C T A C T G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T