Information for 5-TVAGCCDGTGVACTTT (Motif 6)

C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T
Reverse Opposite:
G C T A C T G A T C G A A C T G A G C T A G C T A G T C G C T A A G T C G A T C A C T G A C T G A G T C A C G T A G T C G C T A
p-value:1e-12
log p-value:-2.933e+01
Information Content per bp:1.772
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.0 +/- 26.4bp
Average Position of motif in Background42.0 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TVAGCCDGTGVACTTT
-CAGCC----------
 C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TVAGCCDGTGVACTTT
ATAATCCC---------
 A C G T C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TVAGCCDGTGVACTTT----
----NNATTGGACTTTNGNN
 C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TVAGCCDGTGVACTTT
TAAGCCACTTGAAATT
 C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TVAGCCDGTGVACTTT
-GAGSCCGAGC-----
 C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T
A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:TVAGCCDGTGVACTTT--------
--------TGGACTTTGNNCTNTG
 C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:TVAGCCDGTGVACTTT-------
--------TGGACTTTGNNCTCN
 C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TVAGCCDGTGVACTTT
TAAGCCACTTAACATT
 C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TVAGCCDGTGVACTTT--
-NNGTATGTGCACATNNN
 C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T A C G T A C G T
A C G T C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:TVAGCCDGTGVACTTT
-TCACCTCTGGGCAG-
 C G A T T A C G C G T A A C T G A G T C A G T C C T A G C T A G C G A T C T A G T C G A C T G A A G T C A G C T A G C T C G A T
A C G T G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T