Information for 12-MGGCAGCCAA (Motif 18)

G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A
Reverse Opposite:
G C A T C G A T A C T G A T C G A T G C C G A T A T C G A T G C G A T C C A T G
p-value:1e-6
log p-value:-1.584e+01
Information Content per bp:1.724
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.96%
Number of Background Sequences with motif662.0
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets50.8 +/- 28.6bp
Average Position of motif in Background51.5 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:MGGCAGCCAA-
--CGTGCCAAG
 G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:MGGCAGCCAA
----TGCCAA
 G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:MGGCAGCCAA
--BCAGACWA
 G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:MGGCAGCCAA--
--GGTGCCAAGT
 G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:MGGCAGCCAA-
---TTGCCAAG
 G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:MGGCAGCCAA
--GCTGTCAA
 G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---MGGCAGCCAA----
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:MGGCAGCCAA-------
--SCAGYCADGCATGAC
 G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---MGGCAGCCAA---
AACTAGCTGTCAATAC
 A C G T A C G T A C G T G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:MGGCAGCCAA----
---AAGGCAAGTGT
 G T A C C T A G A T C G A T G C C G T A A T C G A T G C T G A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T