Information for 10-CTTCACAGAC (Motif 17)

G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C
Reverse Opposite:
C T A G C A G T A G T C A C G T A C T G A C G T A C T G T C G A C G T A C A T G
p-value:1e-8
log p-value:-1.877e+01
Information Content per bp:1.830
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.40%
Number of Background Sequences with motif227.1
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets41.2 +/- 27.0bp
Average Position of motif in Background52.4 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTTCACAGAC
---CACAGN-
 G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTTCACAGAC
-TTGACAGC-
 G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CTTCACAGAC----
----CCAGACRSVB
 G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTTCACAGAC-
-TTMACACCTT
 G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C A C G T
A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTTCACAGAC
-TTGACAGG-
 G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C
A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CTTCACAGAC--
----CCAGACAG
 G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CTTCACAGAC--
----BCAGACWA
 G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTTCACAGAC
-TTGACAG--
 G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTTCACAGAC----
NNATTGACAGGTGCTT
 A C G T A C G T G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C A C G T A C G T A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTTCACAGAC-
-TGCCCAGNHW
 G T A C C G A T A G C T T G A C G T C A A G T C C G T A A C T G G T C A G A T C A C G T
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A