Information for 5-GCCATTGTTT (Motif 5)

A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T
Reverse Opposite:
C T G A T G C A C G T A G A T C C G T A G T C A G C A T T C A G T A C G T A G C
p-value:1e-14
log p-value:-3.435e+01
Information Content per bp:1.637
Number of Target Sequences with motif91.0
Percentage of Target Sequences with motif11.12%
Number of Background Sequences with motif2109.9
Percentage of Background Sequences with motif4.38%
Average Position of motif in Targets54.9 +/- 26.2bp
Average Position of motif in Background50.0 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTT-
-CCATTGTTYB
 A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GCCATTGTTT
NCCATTGTTY
 A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.92
Offset:0
Orientation:forward strand
Alignment:GCCATTGTTT
NCCATTGTTC
 A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.91
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTT
-CCATTGTTC
 A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.91
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTT-
-CCATTGTTTT
 A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--GCCATTGTTT---
NNNCCATTGTGTNAN
 A C G T A C G T A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.90
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTT-
-CCATTGTTNY
 A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T A C G T
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTT
-CCWTTGTY-
 A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTT-
-CCWTTGTYYB
 A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.88
Offset:1
Orientation:forward strand
Alignment:GCCATTGTTT
-CCTTTGTT-
 A T C G A T G C A G T C C G T A C A G T A C G T C T A G G C A T A C G T G A C T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T