Information for 4-CCTATTGTTG (Motif 4)

A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G
Reverse Opposite:
T A G C G T C A T C G A G T A C C G T A C G T A A C G T C T G A T C A G T C A G
p-value:1e-14
log p-value:-3.427e+01
Information Content per bp:1.651
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.61%
Number of Background Sequences with motif428.0
Percentage of Background Sequences with motif0.89%
Average Position of motif in Targets55.3 +/- 26.2bp
Average Position of motif in Background52.5 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.89
Offset:1
Orientation:forward strand
Alignment:CCTATTGTTG
-CCATTGTTC
 A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--CCTATTGTTG-----
CNNNTATTGTTCNNNNN
 A C G T A C G T A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G A C G T A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCTATTGTTG
NCCATTGTTC
 A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0065.1_Sox15_1/Jaspar

Match Rank:4
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CCTATTGTTG----
ANNTCTATTGTTCNNNA
 A C G T A C G T A C G T A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G A C G T A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CCTATTGTTG-----
AATCAATTGTTCCGCTA
 A C G T A C G T A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G A C G T A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0073.1_Sox7_1/Jaspar

Match Rank:6
Score:0.85
Offset:-6
Orientation:reverse strand
Alignment:------CCTATTGTTG------
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CCTATTGTTG-
-CCATTGTTNY
 A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G A C G T
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CCTATTGTTG-
-CCATTGTTYB
 A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---CCTATTGTTG---
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G A C G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.84
Offset:3
Orientation:forward strand
Alignment:CCTATTGTTG
---ATTGTT-
 A G T C A G T C G A C T T G C A C G A T A C G T A C T G A G C T C A G T A T C G
A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T