Information for 4-CYCCCTTGCCCTGCTG (Motif 3)

A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G
Reverse Opposite:
A T G C C G T A A C T G A G T C G C T A C T A G C T A G A T C G A T G C C G T A C T G A A C T G C A T G C T A G C T A G A C T G
p-value:1e-16
log p-value:-3.826e+01
Information Content per bp:1.781
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.5 +/- 26.1bp
Average Position of motif in Background77.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CYCCCTTGCCCTGCTG
-NNACTTGCCTT----
 A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CYCCCTTGCCCTGCTG--
------CCCCCTGCTGTG
 A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CYCCCTTGCCCTGCTG
KGCCCTTCCCCA----
 A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G
C A G T C A T G G A T C G A T C G A T C G A C T A G C T T G A C G A T C G A T C G A T C C T G A A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CYCCCTTGCCCTGCTG-
--GTCATGCHTGRCTGS
 A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G A C G T
A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CYCCCTTGCCCTGCTG-----
------TCNCCTGCTGNGNNN
 A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CYCCCTTGCCCTGCTG-----
------TNTCCTGCTGTGNNG
 A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CYCCCTTGCCCTGCTG
--CACTTCCTCT----
 A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G
A C G T A C G T A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.52
Offset:9
Orientation:forward strand
Alignment:CYCCCTTGCCCTGCTG---
---------CCTGCTGAGH
 A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CYCCCTTGCCCTGCTG
--CCCCTCCCCCAC--
 A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G
A C G T A C G T T A G C G T A C A G T C G T A C C G A T A G T C A G T C A G T C A G T C A G T C C G T A G A T C A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CYCCCTTGCCCTGCTG-----
------NNTCCTGCTGTGNNN
 A G T C G A T C A G T C G T A C A G T C A G C T A C G T A T C G A T G C A G T C A G T C C G A T C T A G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C