Information for 12-GAATACAGAC (Motif 27)

T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C
Reverse Opposite:
A T C G C G A T A G T C G C A T T A C G C A G T C G T A A G C T A G C T A G T C
p-value:1e-7
log p-value:-1.794e+01
Information Content per bp:1.663
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.77%
Number of Background Sequences with motif172.1
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets47.5 +/- 27.6bp
Average Position of motif in Background51.7 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAATACAGAC------
CAAATCCAGACATCACA
 A C G T T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GAATACAGAC----
----CCAGACRSVB
 T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

FOXH1/MA0479.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAATACAGAC
TCCAATCCACA-
 A C G T A C G T T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GAATACAGAC--
----CCAGACAG
 T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAATACAGAC-
-ATGCCAGACN
 T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C A C G T
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GAATACAGAC--
----BCAGACWA
 T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAATACAGAC
GTAAACAG--
 T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C
C T A G C A G T G T C A C G T A C T G A A G T C C G T A T A C G A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAATACAGAC-
SSAATCCACANN
 A C G T T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

FOXP2/MA0593.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAATACAGAC
AAGTAAACAAA-
 A C G T A C G T T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C
C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GAATACAGAC
CAAAAGTAAACAAAG
 A C G T A C G T A C G T A C G T A C G T T C A G T C G A T C G A G C A T G T C A A T G C C G T A T C A G G C T A T A G C
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G