Information for 8-CAGBCGGCCAGAV (Motif 11)

A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C
Reverse Opposite:
A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G T C A T C G T C G A G T A C A C G T A C T G
p-value:1e-9
log p-value:-2.194e+01
Information Content per bp:1.852
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.3 +/- 28.0bp
Average Position of motif in Background61.8 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CAGBCGGCCAGAV
TGGCAGNCTGCCAG--
 A C G T A C G T A C G T A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CAGBCGGCCAGAV-
----ATGCCAGACN
 A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:CAGBCGGCCAGAV----
-------CCAGACRSVB
 A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:CAGBCGGCCAGAV--
-------CCAGACAG
 A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CAGBCGGCCAGAV
-----TGCCAA--
 A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAGBCGGCCAGAV
CTTGGCANNNTGCCAA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAGBCGGCCAGAV
---CGTGCCAAG-
 A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CAGBCGGCCAGAV
GTAGGTCACTGGGTCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAGBCGGCCAGAV------
--CAAATCCAGACATCACA
 A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CAGBCGGCCAGAV
TGGCACCATGCCAA--
 A C G T A C G T A C G T A G T C C G T A A C T G A C G T A T G C A C T G A C T G A G T C A G T C C G T A A C T G T C G A T A G C
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T