Information for 8-GTCAGGGCAA (Motif 7)

A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A
Reverse Opposite:
G C A T C G A T A T C G A G T C G T A C T G A C G C A T A C T G T G C A T G A C
p-value:1e-12
log p-value:-2.828e+01
Information Content per bp:1.665
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.55%
Number of Background Sequences with motif284.7
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets46.8 +/- 24.7bp
Average Position of motif in Background48.9 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGGCAA
WDNCTGGGCA-
 A C G T A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GTCAGGGCAA
-TNNGGGCAG
 A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTCAGGGCAA-
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGGGCAA--
TTGCCATGGCAACN
 A C G T A C G T A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTCAGGGCAA-
TTCTTGGAAAN
 A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A A C G T
A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGGGCAA--
TTGCCATGGCAACC
 A C G T A C G T A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A A C G T A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTCAGGGCAA
-TRAGGTCA-
 A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

STAT3/MA0144.2/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGGCAA
CTTCTGGGAAA
 A C G T A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A
A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTCAGGGCAA---
-SCCTAGCAACAG
 A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A A C G T A C G T A C G T
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTCAGGGCAA---
GTTGCCATGGCAACCG
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C T G C A T G T C A G T A G C G C T A C G T A A C G T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G