Information for 5-GCCATGCTTCATT (Motif 6)

C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T
Reverse Opposite:
C G T A C G T A A C G T C T A G G T C A C G T A T A C G A G T C C T G A A C G T A C T G T A C G G A T C
p-value:1e-14
log p-value:-3.313e+01
Information Content per bp:1.777
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif9.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets33.4 +/- 21.1bp
Average Position of motif in Background65.8 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX1/MA0779.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCATGCTTCATT---
CGTCACGCATGACTGCA
 A C G T C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCATGCTTCATT--
NGTCACGCTTGGCTGC
 A C G T C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCATGCTTCATT--
GTCATGCHTGRCTGS
 C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCCATGCTTCATT---
CGTCACGCATGACTGCA
 A C G T C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCATGCTTCATT
GYCATCMATCAT-
 C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCCATGCTTCATT------
GTCACGCTTGGCTGCNCNN
 C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

JDP2/MA0655.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCCATGCTTCATT
---ATGACTCAT-
 C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T
A C G T A C G T A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCCATGCTTCATT
--CATGACTCATC
 C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T
A C G T A C G T T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C

Pax6/MA0069.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCATGCTTCATT-
TTCACGCATGAGTT
 C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCATGCTTCATT-----
-TCACCCATCAATAAACA
 C A T G A G T C A G T C G T C A A G C T C T A G A G T C C G A T A C G T A G T C C G T A G A C T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A