Information for 9-ATAACAAAAGMAG (Motif 9)

T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G
Reverse Opposite:
G A T C G C A T A C T G A T G C A G C T C G A T C G A T A C G T A T C G A C G T A C G T G C T A A C G T
p-value:1e-12
log p-value:-2.779e+01
Information Content per bp:1.676
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.40%
Number of Background Sequences with motif679.4
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets54.0 +/- 25.3bp
Average Position of motif in Background51.2 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:ATAACAAAAGMAG
--RACAAWGG---
 T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:ATAACAAAAGMAG
RNAACAATGG---
 T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:ATAACAAAAGMAG
AAAACAAAGG---
 T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:ATAACAAAAGMAG
-GAACAATGGN--
 T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:ATAACAAAAGMAG
--AACAAAGG---
 T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.79
Offset:1
Orientation:forward strand
Alignment:ATAACAAAAGMAG
-RAACAATGGN--
 T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---ATAACAAAAGMAG-
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:ATAACAAAAGMAG
VRAACAATGG---
 T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---ATAACAAAAGMAG-
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:ATAACAAAAGMAG
-GAACAATGG---
 T G C A C G A T T G C A C G T A A T G C C G T A C G T A G C T A C T G A A T C G T G A C C G T A C T A G
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T