Information for 7-TTCTTCACCTTGKCAA (Motif 7)

A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A
Reverse Opposite:
A C G T C A G T A T C G G T A C A G T C C G T A C T G A C T A G A C T G C G A T A C T G T G C A C T G A C T A G G T C A G T C A
p-value:1e-9
log p-value:-2.266e+01
Information Content per bp:1.759
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.1 +/- 21.1bp
Average Position of motif in Background60.2 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTCTTCACCTTGKCAA-----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.58
Offset:8
Orientation:reverse strand
Alignment:TTCTTCACCTTGKCAA
--------CTTGGCAA
 A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTCTTCACCTTGKCAA-----
-TCAGCACCATGGACAGCTCC
 A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TTCTTCACCTTGKCAA-
---GTTGCCATGGCAAC
 A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A A C G T
A C G T A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTCTTCACCTTGKCAA
--BNTGDCCTTG----
 A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TTCTTCACCTTGKCAA
----TGACCTTGAV--
 A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:TTCTTCACCTTGKCAA-
--------NTTGGCANN
 A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TTCTTCACCTTGKCAA--
-TGTTCCCATTGTGTACT
 A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A A C G T A C G T
A C G T C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TTCTTCACCTTGKCAA--
----TTGCCATGGCAACN
 A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.54
Offset:9
Orientation:forward strand
Alignment:TTCTTCACCTTGKCAA
---------TTGGCA-
 A C G T A C G T A G T C G A C T A C G T A G T C C G T A A G T C G A T C A G C T A C G T A C T G A C T G A T G C G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T