Information for 5-GCACCAGKGGGCA (Motif 4)

A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A
Reverse Opposite:
A G C T C T A G A G T C A G T C G T A C G T A C A T G C A C G T C T A G A T C G G C A T C T A G A T G C
p-value:1e-13
log p-value:-3.003e+01
Information Content per bp:1.792
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif26.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets43.8 +/- 20.4bp
Average Position of motif in Background40.0 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---GCACCAGKGGGCA----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GCACCAGKGGGCA------
GCCASCAGGGGGCGCYVNNG
 A C G T A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---GCACCAGKGGGCA---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:GCACCAGKGGGCA-
-----NGTGGGCAT
 A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GCACCAGKGGGCA-
-----GGTTGGCAT
 A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCACCAGKGGGCA-
TCACCTCTGGGCAG
 A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCACCAGKGGGCA
CACAGCGGGGGGTC
 A C G T A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCACCAGKGGGCA
NCNCAGCGGGGGGTC
 A C G T A C G T A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCACCAGKGGGCA
NCGCAGCGGGGGGTC
 A C G T A C G T A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCACCAGKGGGCA-
-----TNNGGGCAG
 A T C G A G T C C G T A A T G C A G T C C G T A A T C G C A T G A C T G A C T G A C T G A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G