Information for 6-AGACCATGGACAG (Motif 8)

C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G
Reverse Opposite:
G A T C A C G T A C T G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C G T
p-value:1e-10
log p-value:-2.433e+01
Information Content per bp:1.942
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.0 +/- 22.8bp
Average Position of motif in Background35.3 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AGACCATGGACAG----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C G T C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGACCATGGACAG----
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C G T C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGACCATGGACAG
AAAACAATGG----
 A C G T C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGACCATGGACAG
VRAACAATGG----
 A C G T C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGACCATGGACAG
---CCAGGAACAG
 C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G
A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGACCATGGACAG-
AAGTTCAAGGTCAGC
 A C G T C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGACCATGGACAG
RAACAATGGN---
 C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGACCATGGACAG
-AACAAAGG----
 C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGACCATGGACAG-
----AATGGAAAAT
 C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGACCATGGACAG-
----NATGGAAAAN
 C G T A C T A G C G T A A G T C A G T C C G T A A C G T A C T G A C T G C G T A G T A C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T