Information for 7-GGCTGACCTGGTT (Motif 9)

A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T
Reverse Opposite:
C G T A C T G A A G T C A G T C C G T A A C T G A C T G A C G T A G T C C G T A C T A G A T G C A G T C
p-value:1e-11
log p-value:-2.652e+01
Information Content per bp:1.939
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.7 +/- 19.8bp
Average Position of motif in Background56.1 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GGCTGACCTGGTT
---TGACCTTGAT
 A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GGCTGACCTGGTT
---TGACCTARTT
 A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GGCTGACCTGGTT---
--TTGACCTANTTATN
 A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GGCTGACCTGGTT
---TGACCT----
 A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GGCTGACCTGGTT
---TGACCTYA--
 A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGCTGACCTGGTT--
NNNNTGACCCGGCGCG
 A C G T A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GGCTGACCTGGTT
-CCTCACCTG---
 A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T
A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGCTGACCTGGTT
--NTGACCTTGA-
 A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGCTGACCTGGTT
-RYHYACCTGB--
 A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T
A C G T T C A G A G C T G C T A A G T C C G T A G T A C A T G C A C G T A C T G A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGCTGACCTGGTT
--GTGACCTT---
 A C T G A T C G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G C T A G A G C T A C G T
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T