Information for 5-WCCGGGRCAARKG (Motif 7)

C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G
Reverse Opposite:
A G T C G T A C A G C T A C G T A C G T A C T G A G T C A G T C A G T C G A T C A T C G A C T G C G T A
p-value:1e-11
log p-value:-2.697e+01
Information Content per bp:1.870
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.1 +/- 22.2bp
Average Position of motif in Background45.0 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:WCCGGGRCAARKG---
-GTAGGGCAAAGGTCA
 C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G A C G T A C G T A C G T
A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:WCCGGGRCAARKG---
--TGGGGCAAAGGTCA
 C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:WCCGGGRCAARKG---
--TAGGGCAAAGGTCA
 C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:WCCGGGRCAARKG
---GGAACAAAGR
 C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---WCCGGGRCAARKG
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:WCCGGGRCAARKG
---AAAACAAAGG
 C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-WCCGGGRCAARKG
WDNCTGGGCA----
 A C G T C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:WCCGGGRCAARKG---
-AGGGGTCAGAGGTCA
 C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G A C G T A C G T A C G T
A C G T T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---WCCGGGRCAARKG
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

RXRB/MA0855.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:WCCGGGRCAARKG---
--GGGGTCAAAGGTCA
 C G A T A G T C A T G C C A T G A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A