Information for 10-CTCCCTGACA (Motif 18)

A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A
Reverse Opposite:
C G A T T A C G A C G T A G T C T G C A C T A G T A C G A T C G T C G A T A C G
p-value:1e-8
log p-value:-1.995e+01
Information Content per bp:1.810
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.96%
Number of Background Sequences with motif342.1
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets46.5 +/- 26.8bp
Average Position of motif in Background50.3 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

INSM1/MA0155.1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CTCCCTGACA
CGCCCCCTGACA
 A C G T A C G T A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.70
Offset:4
Orientation:forward strand
Alignment:CTCCCTGACA-
----TTGACAG
 A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A A C G T
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTCCCTGACA--
--VGCTGWCAVB
 A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A A C G T A C G T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CTCCCTGACA--
----YTGWCADY
 A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTCCCTGACA
--ARNTGACA
 A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CTCCCTGACA--
----TTGACAGG
 A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTCCCTGACA------
-TCCCAGMCRAGCCCC
 A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CTCCCTGACA--
----TTGACAGC
 A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTCCCTGACA
--NCGTGACN
 A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTCCCTGACA-
---CCAGACAG
 A T G C A G C T A T G C A T G C A G T C A C G T T C A G G T C A A T G C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G