Information for 7-GAGGGAGCCATAA (Motif 4)

A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A
Reverse Opposite:
A G C T A C G T C T G A A C G T C A T G A C T G G T A C A C G T A G T C A G T C A G T C A C G T A G T C
p-value:1e-11
log p-value:-2.673e+01
Information Content per bp:1.921
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 26.8bp
Average Position of motif in Background69.8 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GAGGGAGCCATAA
--CGGAGC-----
 A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAGGGAGCCATAA------
---AGAGCCATAAAATTCG
 A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GAGGGAGCCATAA--
----AAGCCATAAAA
 A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GAGGGAGCCATAA------
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGGGAGCCATAA
GGGCGGGAAGG----
 A C G T A C G T A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGGGAGCCATAA
GGGCGGGACC-----
 A C G T A C G T A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A
A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C A C G T A C G T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGGGAGCCATAA-
TTGGGGGCGCCCCTAG
 A C G T A C G T A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGGGAGCCATAA
GGCGGGAARN----
 A C G T A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A
T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GAGGGAGCCATAA--
------GCAATAAAA
 A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GAGGGAGCCATAA
GRTGMTRGAGCC----
 A C G T A C G T A C G T A C T G G T C A A C T G A C T G A C T G C G T A A C T G A G T C G T A C G T C A A G C T G T C A C T G A
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T