Information for 6-AGATGYMAATGWWGAY (Motif 3)

C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
Reverse Opposite:
T C G A C A G T A G T C C G T A C G A T A G T C C G T A A C G T A C G T C A T G T C A G A G T C G T C A A C G T A G T C A C G T
p-value:1e-12
log p-value:-2.865e+01
Information Content per bp:1.696
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif29.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets40.1 +/- 21.7bp
Average Position of motif in Background45.8 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0169.1_Tgif1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----AGATGYMAATGWWGAY
NNNCAGCTGTCAATATN---
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGATGYMAATGWWGAY
ATATGCAAATNNN---
 C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGATGYMAATGWWGAY
AACTAGCTGTCAATAC----
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGATGYMAATGWWGAY
ATATGCAAAT------
 C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGATGYMAATGWWGAY
AACGAGCTGTCAATAC----
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C A C G T A C G T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGATGYMAATGWWGAY
AAAGACCTGTCAATAC----
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C A C G T A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGATGYMAATGWWGAY
AGGTGTTAAT------
 C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGATGYMAATGWWGAY
-WATGCAAATGAG---
 C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGATGYMAATGWWGAY
TTATGCAAAT------
 C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGATGYMAATGWWGAY
AATTACCTGTCAATAC----
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A C A G T A C T G A G T C G T A C G T C A T G C A A C G T C T A G C G T A C G A T C T A G G T C A A G C T
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C A C G T A C G T A C G T A C G T