Information for 9-GTCATTATTT (Motif 12)

A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A C G T C G T A C G T A A C G T A C T G C G T A A G T C
p-value:1e-5
log p-value:-1.374e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 27.8bp
Average Position of motif in Background48.4 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GTCATTATTT--
GGAGGTCATTAATTAT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---GTCATTATTT---
GANGTAATTAATTANN
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GTCATTATTT---
CNNAGTAATTAATTNNC
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T A G C T C A G T C G A C T G A C A T G G A C T G T C A C G T A C G A T C G A T C T G A G C T A C G A T G C A T C G A T A C G T G A T C

PH0120.1_Nkx6-3/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----GTCATTATTT---
CNNANTAATTAATTNNC
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

PH0152.1_Pou6f1_2/Jaspar

Match Rank:5
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GTCATTATTT--
GCAACCTCATTATNNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

MEOX2/MA0706.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GTCATTATTT
AGTAATTAAC-
 A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T
C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTCATTATTT
GTCATN----
 A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GTCATTATTT
AGCTCATTAT--
 A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T

EMX1/MA0612.1/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTCATTATTT
NNTAATTAGN-
 A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T
T C A G A T C G G A C T G T C A G C T A G C A T A G C T C T G A C T A G A C T G A C G T

PH0019.1_Dbx2/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GTCATTATTT---
NAATTAATTAATTNNN
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C A T G C G T A T G C A G C A T G A C T G T C A G C T A G A C T G C A T C T G A C G T A G C A T C A G T C T G A G T C A T C G A