Information for 7-GYAGAGGGTGCCA (Motif 3)

T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A
Reverse Opposite:
C G A T A T C G A C T G A G T C G C T A A G T C G T A C A G T C A G C T A T G C A G C T T C A G A G T C
p-value:1e-13
log p-value:-3.143e+01
Information Content per bp:1.744
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif56.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets65.2 +/- 18.4bp
Average Position of motif in Background51.1 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.64
Offset:6
Orientation:forward strand
Alignment:GYAGAGGGTGCCA--
------CGTGCCAAG
 T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:GYAGAGGGTGCCA-
--------TGCCAA
 T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GYAGAGGGTGCCA---
------GGTGCCAAGT
 T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.61
Offset:7
Orientation:forward strand
Alignment:GYAGAGGGTGCCA---
-------ATGCCAACC
 T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GYAGAGGGTGCCA
----AGCGCGCC-
 T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A
A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GYAGAGGGTGCCA---
GCTGGGGGGTACCCCTT
 A C G T T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A A C G T A C G T A C G T
C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GYAGAGGGTGCCA----
-NGTAGGTTGGCATNNN
 T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:7
Orientation:forward strand
Alignment:GYAGAGGGTGCCA--
-------TTGCCAAG
 T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GYAGAGGGTGCCA
-----CGGAGC--
 T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GYAGAGGGTGCCA----
-TTGGGGGCGCCCCTAG
 T C A G A G T C C T G A A T C G C T G A A C T G A C T G T C A G C G A T A C T G A G T C T A G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G