Information for 11-GCCTTTAGCC (Motif 9)

C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C
Reverse Opposite:
C T A G C T A G G A T C A G C T C T G A C G T A C G T A A C T G C T A G G A T C
p-value:1e-23
log p-value:-5.479e+01
Information Content per bp:1.738
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif9.25%
Number of Background Sequences with motif453.4
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets52.6 +/- 26.4bp
Average Position of motif in Background51.1 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTTAGCC
ANCGTTTANN-
 A C G T C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTTAGCC
NNCAATTANN-
 A C G T C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCCTTTAGCC
BCMATTAG--
 C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTTAGCC
TGACCTTGACCT
 A C G T A C G T C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCCTTTAGCC-
GCTGACCTTGAACTN
 A C G T A C G T A C G T A C G T C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCTTTAGCC
TGACCTTTNCNT
 A C G T A C G T C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C
A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCTTTAGCC--
TGACCTTTGCCCCA
 A C G T A C G T C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTTAGCC---
TGACCTTTGCCCTAN
 A C G T A C G T C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C A C G T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCTTTAGCC
AAACMATTAN--
 A C G T A C G T C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTTAGCC--
TGACCTTTGCCCTA
 A C G T A C G T C T A G A G T C G T A C A C G T A C G T A G C T C T G A C T A G A G T C A G T C A C G T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A