Motif 24

Information for 21-CACCGCCACGGGG (Motif 24)

Reverse Opposite:

p-value:	1e-6
log p-value:	-1.384e+01
Information Content per bp:	1.792
Number of Target Sequences with motif	5.0
Percentage of Target Sequences with motif	1.25%
Number of Background Sequences with motif	20.2
Percentage of Background Sequences with motif	0.04%
Average Position of motif in Targets	42.0 +/- 30.1bp
Average Position of motif in Background	49.3 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)	1.3
Multiplicity (# of sites on avg that occur together)	1.40
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

PB0102.1_Zic2_1/Jaspar

Match Rank:	1
Score:	0.68
Offset:	1
Orientation:	reverse strand
Alignment:	CACCGCCACGGGG--- -ACCCCCCCGGGGGGN

PB0103.1_Zic3_1/Jaspar

Match Rank:	2
Score:	0.68
Offset:	1
Orientation:	reverse strand
Alignment:	CACCGCCACGGGG--- -NCCCCCCCGGGGGGN

PB0101.1_Zic1_1/Jaspar

Match Rank:	3
Score:	0.65
Offset:	2
Orientation:	reverse strand
Alignment:	CACCGCCACGGGG--- --CCCCCCCGGGGGNN

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:	4
Score:	0.59
Offset:	3
Orientation:	reverse strand
Alignment:	CACCGCCACGGGG-- ---TGCCCNGGGGCA

TFAP2B/MA0811.1/Jaspar

Match Rank:	5
Score:	0.56
Offset:	3
Orientation:	reverse strand
Alignment:	CACCGCCACGGGG-- ---TGCCCTNGGGCA

Sp1(Zf)/Promoter/Homer

Match Rank:	6
Score:	0.56
Offset:	-2
Orientation:	forward strand
Alignment:	--CACCGCCACGGGG GGCCCCGCCCCC---

TFAP2C/MA0524.2/Jaspar

Match Rank:	7
Score:	0.55
Offset:	3
Orientation:	forward strand
Alignment:	CACCGCCACGGGG-- ---TGCCCCAGGGCA

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:	8
Score:	0.55
Offset:	4
Orientation:	reverse strand
Alignment:	CACCGCCACGGGG--- ----TCCCCTGGGGAC

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:	9
Score:	0.55
Offset:	1
Orientation:	reverse strand
Alignment:	CACCGCCACGGGG--- -NTCGCCTCAGGCAAT

PB0164.1_Smad3_2/Jaspar

Match Rank:	10
Score:	0.54
Offset:	-4
Orientation:	forward strand
Alignment:	----CACCGCCACGGGG TACGCCCCGCCACTCTG