Information for 9-GTGAGAGAGA (Motif 14)

T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A
Reverse Opposite:
A C G T G T A C C A G T T A G C A G C T G T A C G C A T G T A C G T C A A T G C
p-value:1e-5
log p-value:-1.153e+01
Information Content per bp:1.649
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif5.62%
Number of Background Sequences with motif1340.5
Percentage of Background Sequences with motif2.77%
Average Position of motif in Targets45.4 +/- 26.5bp
Average Position of motif in Background51.1 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTGAGAGAGA-
AGGTGNCAGACAG
 A C G T A C G T T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GTGAGAGAGA
AGGTGHCAGACA
 A C G T A C G T T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PRDM1/MA0508.1/Jaspar

Match Rank:3
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GTGAGAGAGA
AGAAAGTGAAAGTGA
 A C G T A C G T A C G T A C G T A C G T T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

MGA/MA0801.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTGAGAGAGA
AGGTGTGA----
 A C G T A C G T T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A
C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTGAGAGAGA-----
TTGACCGAGAATTCC
 T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTGAGAGAGA
AGGTGTGAAM--
 A C G T A C G T T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTGAGAGAGA
AGGTGTGA----
 A C G T A C G T T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A
C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTGAGAGAGA--
NTGATTGACAGN
 T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

TBR1/MA0802.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTGAGAGAGA
AGGTGTGAAA--
 A C G T A C G T T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GTGAGAGAGA
AAGGTGTGAAA--
 A C G T A C G T A C G T T A C G C A G T C A T G C G T A C A T G T C G A A T C G G T C A C A T G T G C A
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T