Information for 6-TAGGTCACGT (Motif 13)

A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T
Reverse Opposite:
C G T A A T G C C T A G A C G T A C T G C G T A A G T C A T G C A G C T T G C A
p-value:1e-10
log p-value:-2.389e+01
Information Content per bp:1.872
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif41.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets49.0 +/- 29.5bp
Average Position of motif in Background56.7 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

USF1/MA0093.2/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:TAGGTCACGT---
--GGTCACGTGGC
 A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C

Arntl/MA0603.1/Jaspar

Match Rank:2
Score:0.78
Offset:2
Orientation:forward strand
Alignment:TAGGTCACGT--
--GGTCACGTGC
 A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T
A C G T A C G T C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:TAGGTCACGT
-AGGTCA---
 A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TAGGTCACGT
AAGGTCAC--
 A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.76
Offset:2
Orientation:forward strand
Alignment:TAGGTCACGT--
--GGTCACGTGA
 A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T
A C G T A C G T T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A

E-box(bHLH)/Promoter/Homer

Match Rank:6
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TAGGTCACGT--
CCGGTCACGTGA
 A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T
A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCACGT
ATCAAGGTCA---
 A C G T A C G T A C G T A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TAGGTCACGT
TRAGGTCA---
 A C G T A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

TFEB/MA0692.1/Jaspar

Match Rank:9
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:TAGGTCACGT---
---GTCACGTGAT
 A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G A C G T T G A C C G T A A G T C T C A G C A G T C A T G T C G A A G C T

BHLHE41/MA0636.1/Jaspar

Match Rank:10
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:TAGGTCACGT---
---GTCACGTGAC
 A C G T C T G A A T C G A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A G T A G T C C G T A A G T C C T A G A G C T A T C G G T C A A G T C