Information for 6-TTAGTGGTAA (Motif 4)

A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A
Reverse Opposite:
A C G T C G A T C G T A A G T C A G T C G C T A A G T C A C G T C T G A C T G A
p-value:1e-15
log p-value:-3.589e+01
Information Content per bp:1.897
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif27.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets48.4 +/- 27.8bp
Average Position of motif in Background52.6 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-1/MA0124.2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTAGTGGTAA
TTAAGTGGT--
 A C G T A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTAGTGGTAA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGTGGTAA--
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTAGTGGTAA
GGAGGGGGAA
 A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A
A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A

NKX3-2/MA0122.2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTAGTGGTAA
TTAAGTGGN--
 A C G T A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTAGTGGTAA
--AGRGGTCA
 A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGTGGTAA--
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TTAGTGGTAA--
--AATGGAAAAT
 A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A A C G T A C G T
A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTAGTGGTAA----
---CAGGTAAGTAT
 A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTAGTGGTAA
TTRAGTGSYK-
 A C G T A G C T A G C T C G T A A C T G C G A T A C T G A C T G A C G T C G T A C G T A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T