Information for 2-CACAGACTTAAAA (Motif 3)

G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A
Reverse Opposite:
C G A T A C G T A G C T A G C T C G T A C G T A T C A G A G C T A T G C A C G T A C T G A C G T C A T G
p-value:1e-9
log p-value:-2.182e+01
Information Content per bp:1.703
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif9.66%
Number of Background Sequences with motif494.7
Percentage of Background Sequences with motif1.00%
Average Position of motif in Targets63.8 +/- 21.7bp
Average Position of motif in Background47.0 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CACAGACTTAAAA
AGCGGCACACACGCAA--
 A C G T A C G T A C G T A C G T A C G T G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CACAGACTTAAAA
AAACCACAGAN------
 A C G T A C G T A C G T A C G T G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CACAGACTTAAAA
NWAACCACADNN------
 A C G T A C G T A C G T A C G T A C G T G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CACAGACTTAAAA--
TAAGCCACTTGAAATT
 A C G T G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CACAGACTTAAAA
---CGGTTTCAAA
 G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CACAGACTTAAAA---
ATAACCACTTGAAAATT
 A C G T G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CACAGACTTAAAA
CGAAGCACACAAAATA--
 A C G T A C G T A C G T A C G T A C G T G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CACAGACTTAAAA--
-----ACATCAAAGG
 G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CACAGACTTAAAA
CACAGN-------
 G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CACAGACTTAAAA--
TAAGCCACTTAACATT
 A C G T G A T C C G T A G T A C C G T A T A C G T C G A A G T C C G A T G C A T T C G A C T G A G T C A C G T A A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T