Information for 11-GVCAGGCCTGTCA (Motif 11)

A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A
Reverse Opposite:
C A G T A C T G T G C A A G T C G T C A A C T G A T C G A G T C A G T C A C G T A C T G A T G C T G A C
p-value:1e-12
log p-value:-2.829e+01
Information Content per bp:1.777
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.8 +/- 11.0bp
Average Position of motif in Background54.1 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS2/MA0774.1/Jaspar

Match Rank:1
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:GVCAGGCCTGTCA-
------GCTGTCAA
 A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:GVCAGGCCTGTCA-
------CCTGTCAA
 A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GVCAGGCCTGTCA--
-----VGCTGWCAVB
 A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:GVCAGGCCTGTCA-
-------NTGTCAN
 A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GVCAGGCCTGTCA
SCAGYCADGCATGAC-
 A C G T A C G T A C G T A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GVCAGGCCTGTCA----
-AAGCACCTGTCAATAT
 A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A A C G T A C G T A C G T A C G T
A C G T G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.60
Offset:8
Orientation:forward strand
Alignment:GVCAGGCCTGTCA---
--------TGTCANYT
 A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GVCAGGCCTGTCA-----
-NNNCAGCTGTCAATATN
 A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GVCAGGCCTGTCA----
-AAAGACCTGTCAATCC
 A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A A C G T A C G T A C G T A C G T
A C G T C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GVCAGGCCTGTCA
-CNAGGCCT----
 A C T G T A C G A G T C C G T A C T A G C T A G T A G C G T A C A C G T A C T G A C G T G T A C G T C A
A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T