Information for 1-ARYCATAAATCAT (Motif 1)

C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T
Reverse Opposite:
C G T A C G A T C T A G C T G A C G A T A C G T C A G T C T G A A G C T C A T G C T A G A G T C G A C T
p-value:1e-116
log p-value:-2.673e+02
Information Content per bp:1.684
Number of Target Sequences with motif137.0
Percentage of Target Sequences with motif31.42%
Number of Background Sequences with motif1002.0
Percentage of Background Sequences with motif2.10%
Average Position of motif in Targets54.1 +/- 22.0bp
Average Position of motif in Background49.8 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.95
Offset:1
Orientation:forward strand
Alignment:ARYCATAAATCAT
-GCCATAAATCA-
 C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.93
Offset:0
Orientation:forward strand
Alignment:ARYCATAAATCAT
GGCCATAAATCAC
 C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:ARYCATAAATCAT
GGCCATAAATCA-
 C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.93
Offset:0
Orientation:forward strand
Alignment:ARYCATAAATCAT
GGCCATAAATCA-
 C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.90
Offset:2
Orientation:forward strand
Alignment:ARYCATAAATCAT
--TCATCAATCA-
 C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:ARYCATAAATCAT
RGCCATYAATCA-
 C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.87
Offset:1
Orientation:forward strand
Alignment:ARYCATAAATCAT
-GYCATCMATCAT
 C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.83
Offset:2
Orientation:forward strand
Alignment:ARYCATAAATCAT-
--CCATCAATCAAA
 C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T A C G T
A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ARYCATAAATCAT---
GAAGATCAATCACTTA
 C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ARYCATAAATCAT
NGYCATAAAWCH-
 C T G A T C A G G A T C G T A C C T G A A G C T G C T A C G T A G C T A A G C T A G T C C G T A G A C T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T