Information for 7-GCCDGGCHTGGCA (Motif 9)

A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A
Reverse Opposite:
C G A T A C T G G T A C A G T C C G T A C A T G A C T G A G T C A G T C G A C T A C T G A C T G A G T C
p-value:1e-10
log p-value:-2.356e+01
Information Content per bp:1.853
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.76%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.8 +/- 20.1bp
Average Position of motif in Background31.7 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:GCCDGGCHTGGCA-
------CTTGGCAA
 A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCDGGCHTGGCA
GCAGCCAAGCGTGACN
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCCDGGCHTGGCA
SCAGYCADGCATGAC-
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GCCDGGCHTGGCA--
------NTTGGCANN
 A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GCCDGGCHTGGCA--
-----NNTTGGCANN
 A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCDGGCHTGGCA
GGGGCCGAGGCCTG---
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GCCDGGCHTGGCA
-------TTGGCA
 A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GCCDGGCHTGGCA-
------CCTGTCAA
 A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCCDGGCHTGGCA-
-----GGTTGGCAT
 A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GCCDGGCHTGGCA--
-----VGCTGWCAVB
 A C T G A G T C A G T C C G T A C T A G A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C