Information for 4-RGCAGCTGSWGNN (Motif 6)

C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
Reverse Opposite:
T C A G A C G T A G T C C G A T T A C G G A T C C T G A C A T G G T A C G A C T A C T G A T G C G A C T
p-value:1e-13
log p-value:-3.091e+01
Information Content per bp:1.525
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif30.39%
Number of Background Sequences with motif4601.5
Percentage of Background Sequences with motif10.08%
Average Position of motif in Targets51.3 +/- 25.6bp
Average Position of motif in Background49.9 +/- 36.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----RGCAGCTGSWGNN
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C G T C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

Ascl2/MA0816.1/Jaspar

Match Rank:2
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:RGCAGCTGSWGNN
AGCAGCTGCT---
 C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:RGCAGCTGSWGNN
GACAGCTGCAG--
 C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:4
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--RGCAGCTGSWGNN
VNAVCAGCTGGC---
 A C G T A C G T C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.82
Offset:1
Orientation:forward strand
Alignment:RGCAGCTGSWGNN
-NCAGCTGCTG--
 C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:6
Score:0.82
Offset:0
Orientation:forward strand
Alignment:RGCAGCTGSWGNN
AACAGCTGCAG--
 C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.81
Offset:0
Orientation:forward strand
Alignment:RGCAGCTGSWGNN
AGCAGCTGCTNN-
 C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--RGCAGCTGSWGNN
NNVVCAGCTGBN---
 A C G T A C G T C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---RGCAGCTGSWGNN
NGNGACAGCTGCN---
 A C G T A C G T A C G T C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A A C G T A C G T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-RGCAGCTGSWGNN
NNACAGCTGC----
 A C G T C T G A T A C G T G A C C T G A A C T G G T A C G A C T C T A G A T G C G C T A T C A G T G C A A G T C
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T A C G T A C G T