Information for 8-TTGCCACTTA (Motif 8)

A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A
Reverse Opposite:
A C G T C T G A C G T A A T C G A C G T A C T G C T A G A G T C C T G A C T G A
p-value:1e-15
log p-value:-3.668e+01
Information Content per bp:1.839
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif504.7
Percentage of Background Sequences with motif1.07%
Average Position of motif in Targets45.2 +/- 20.5bp
Average Position of motif in Background51.4 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-TTGCCACTTA-
SCTGTCAVTCAV
 A C G T A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.80
Offset:2
Orientation:forward strand
Alignment:TTGCCACTTA-
--ACCACTTAA
 A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A A C G T
A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.80
Offset:2
Orientation:forward strand
Alignment:TTGCCACTTA-
--ACCACTTAA
 A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A A C G T
A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-TTGCCACTTA-
NCTGTCAATCAN
 A C G T A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--TTGCCACTTA-----
CTTAACCACTTAAGGAT
 A C G T A C G T A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TTGCCACTTA-
-MRSCACTYAA
 A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A A C G T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.73
Offset:3
Orientation:forward strand
Alignment:TTGCCACTTA-
---GCACTTAA
 A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A A C G T
A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TTGCCACTTA
GSCTGTCACTCA
 A C G T A C G T A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TTGCCACTTA--
--ACCACTTGAA
 A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A A C G T A C G T
A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TTGCCACTTA-----
CATAACCACTTAACAAC
 A C G T A C G T A G C T A G C T A C T G A G T C A G T C C G T A T A G C A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C