Information for 3-GRAAGCAGCTGTCACT (Motif 5)

C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T
Reverse Opposite:
C G T A A T C G C G A T T A C G C T G A A G T C C G T A A C T G T G A C G C A T C A T G A G T C G A C T C A G T A G T C A G T C
p-value:1e-25
log p-value:-5.779e+01
Information Content per bp:1.608
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif8.14%
Number of Background Sequences with motif757.3
Percentage of Background Sequences with motif1.61%
Average Position of motif in Targets52.9 +/- 24.4bp
Average Position of motif in Background51.3 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Myod1/MA0499.1/Jaspar

Match Rank:1
Score:0.77
Offset:3
Orientation:forward strand
Alignment:GRAAGCAGCTGTCACT
---TGCAGCTGTCCCT
 C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T
A C G T A C G T A C G T G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:2
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:GRAAGCAGCTGTCACT
-NNAGCAGCTGCT---
 C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T
A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:3
Score:0.77
Offset:2
Orientation:forward strand
Alignment:GRAAGCAGCTGTCACT--
--AAGCACCTGTCAATAT
 C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T A C G T A C G T
A C G T A C G T G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PH0169.1_Tgif1/Jaspar

Match Rank:4
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GRAAGCAGCTGTCACT---
--NNNCAGCTGTCAATATN
 C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T A C G T A C G T A C G T
A C G T A C G T G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:GRAAGCAGCTGTCACT
---AGCAGCTGCT---
 C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T
A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GRAAGCAGCTGTCACT
--CAGCAGCTGN----
 C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T
A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:7
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GRAAGCAGCTGTCACT--
--AACTAGCTGTCAATAC
 C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T A C G T A C G T
A C G T A C G T G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

Tcf12/MA0521.1/Jaspar

Match Rank:8
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GRAAGCAGCTGTCACT
--NNGCAGCTGTT---
 C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T
A C G T A C G T A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GRAAGCAGCTGTCACT
--NNGCAGCTGTC---
 C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T
A C G T A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:GRAAGCAGCTGTCACT
----GCAGCTGTNN--
 C T A G T C A G G T C A C T G A T C A G G A T C C G T A A C T G T G A C C G A T C T A G G A C T A T G C G C T A T A G C G C A T
A C G T A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T A C G T A C G T