Information for 1-NDRTGATTTATKGCNN (Motif 1)

T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
Reverse Opposite:
T G A C G T A C T C A G G A T C G T A C C T G A A C G T G C T A C G T A C G T A A C G T A G T C C G T A A G C T G A C T A T C G
p-value:1e-193
log p-value:-4.455e+02
Information Content per bp:1.600
Number of Target Sequences with motif185.0
Percentage of Target Sequences with motif23.15%
Number of Background Sequences with motif430.4
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets49.7 +/- 21.3bp
Average Position of motif in Background47.6 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:NDRTGATTTATKGCNN
---TGATTTATGGC--
 T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.95
Offset:2
Orientation:reverse strand
Alignment:NDRTGATTTATKGCNN
--NTGATTTATGGCC-
 T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.93
Offset:3
Orientation:reverse strand
Alignment:NDRTGATTTATKGCNN
---TGATTTATGGCC-
 T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.93
Offset:3
Orientation:reverse strand
Alignment:NDRTGATTTATKGCNN
---TGATTTATGGCC-
 T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.91
Offset:3
Orientation:reverse strand
Alignment:NDRTGATTTATKGCNN
---TGATTGATGA---
 T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.87
Offset:3
Orientation:forward strand
Alignment:NDRTGATTTATKGCNN
---TGATTRATGGCY-
 T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:NDRTGATTTATKGCNN
--ATGATKGATGRC--
 T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:NDRTGATTTATKGCNN
-TTTGATTGATGN---
 T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:NDRTGATTTATKGCNN
---DGWTTTATGRCN-
 T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:NDRTGATTTATKGCNN
CNGTGATTTN------
 T A G C C T G A T C G A C G A T C T A G C G T A C G A T C G A T C G A T C G T A A G C T C A T G C T A G A G T C C A T G A C G T
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T