Information for 3-CYCTGCTGTGKAGGCC (Motif 6)

A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C
Reverse Opposite:
A C T G T C A G A T G C A G T C A G C T T G A C G T A C T C G A G T A C C G T A A C T G A T G C C G T A C T A G C T A G A C T G
p-value:1e-11
log p-value:-2.612e+01
Information Content per bp:1.797
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.7 +/- 25.5bp
Average Position of motif in Background36.9 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CYCTGCTGTGKAGGCC
CCCCCTGCTGTG------
 A C G T A C G T A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CYCTGCTGTGKAGGCC
TNTCCTGCTGTGNNG---
 A C G T A C G T A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CYCTGCTGTGKAGGCC
TCNCCTGCTGNGNNN---
 A C G T A C G T A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CYCTGCTGTGKAGGCC
GGCCYCCTGCTGDGH-----
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CYCTGCTGTGKAGGCC
NNTCCTGCTGTGNNN---
 A C G T A C G T A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:CYCTGCTGTGKAGGCC-
---------CTAGGCCT
 A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CYCTGCTGTGKAGGCC
GACCCCCCGCTGTG------
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CYCTGCTGTGKAGGCC
-CCTGCTGAGH-----
 A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:11
Orientation:forward strand
Alignment:CYCTGCTGTGKAGGCC---
-----------AGGCCTNG
 A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CYCTGCTGTGKAGGCC
------TGCGTGGGYG
 A G T C A G T C A G T C A C G T A T C G G T A C A C G T A C T G A G C T A C T G A C T G C T G A A C T G A T C G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G